- 01. Atlantis Destroyed - James Newton Howard
- 02. The Smithsonian - James Newton Howard
- 03. Late For Presentation - James Newton Howard
- 04. Milo Is Rejected - James Newton Howard
- 05. Milo Meets Helga - James Newton Howard
- 06. Arriving At Whitmore - James Newton Howard
- 07. The Book - James Newton Howard
- 08. Whitmore Hires Milo - James Newton Howard
- 09. The Submarine - James Newton Howard
- 10. Exterior Lights - James Newton Howard
- 11. Leviathan Battle - James Newton Howard
- 12. Breaking The Surface - James Newton Howard
- 13. The Journey - James Newton Howard
- 14. Mole Digs - James Newton Howard
- 15. The Journey Continues - James Newton Howard
- 16. The Missing Page - James Newton Howard
- 17. Bedding Down - James Newton Howard
- 18. Fireflies - James Newton Howard
- 19. Damage Report - James Newton Howard
- 20. Atlantis Discovered - James Newton Howard
- 21. Milo and Kida Speak - James Newton Howard
- 22. Stay One Night - James Newton Howard
- 23. Milo and Kida Questions - James Newton Howard
- 24. Tour Of Atlantis - James Newton Howard
- 25. Secret Swim - James Newton Howard
- 26. Adventure Capitalists - James Newton Howard
- 27. Storming The Palace - James Newton Howard
- 28. Kida Transforms - James Newton Howard
- 29. The Crew’s Conscience - James Newton Howard
- 30. The King Dies - James Newton Howard
- 31. Going After Rourke - James Newton Howard
- 32. Dogfight - James Newton Howard
- 33. Just Do It - James Newton Howard
- 34. Kida Returns - James Newton Howard
- 35. Goodbyes - James Newton Howard
- 36. Atlantis - James Newton Howard
- 37. Atlantis End Credits - James Newton Howard
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